Gene

sparcl1

ID

ZDB-GENE-060130-6

Name

SPARC-like 1

Symbol

sparcl1 Nomenclature History

Previous Names

SPARCL1 (1)
sparcl (1)

Type

protein_coding_gene

Location

Chr: 1 Mapping Details/Browsers

Description

Predicted to enable calcium ion binding activity; collagen binding activity; and extracellular matrix binding activity. Predicted to be involved in regulation of synapse organization and semicircular canal morphogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in lens. Orthologous to human SPARCL1 (SPARC like 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With sparcl1 Human Ortholog

No data available

Associated With sparcl1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Binding_site	IPR018247	EF-Hand 1, calcium-binding site
Conserved_site	IPR001999	Osteonectin-like, conserved site
Domain	IPR002350	Kazal domain
Domain	IPR003645	Follistatin-like, N-terminal
Domain	IPR015369	Follistatin/Osteonectin EGF domain
Domain	IPR019577	SPARC/Testican, calcium-binding domain
Homologous_superfamily	IPR011992	EF-hand domain pair
Homologous_superfamily	IPR036058	Kazal domain superfamily

Domain Details Per Protein

Protein	Length	EF-Hand 1, calcium-binding site	EF-hand domain pair	Follistatin-like, N-terminal	Follistatin/Osteonectin EGF domain	Kazal domain	Kazal domain superfamily	Osteonectin-like, conserved site	SPARC/Testican, calcium-binding domain
UniProtKB:B3DJ32 InterPro	606

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	sparcl1-201 (1) Ensembl	Ensembl	2,310 nt	Select Tool ZFIN BLAST
mRNA	sparcl1-202 (1) Ensembl	Ensembl	801 nt	Select Tool ZFIN BLAST
mRNA	sparcl1-204 (1) Ensembl	Ensembl	4,166 nt	Select Tool ZFIN BLAST
ncRNA	sparcl1-003 (1) Ensembl	Ensembl	752 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations