Gene

vasna

ID

ZDB-GENE-050522-43

Name

vasorin a

Symbol

vasna Nomenclature History

Previous Names

vasn
id:ibd2098
si:ch211-14g12.2
slitl2 (1)
zgc:110624

Type

protein_coding_gene

Location

Chr: 22 Mapping Details/Browsers

Description

Predicted to have Roundabout binding activity and heparin binding activity. Predicted to be involved in axon guidance and negative chemotaxis. Predicted to localize to integral component of membrane. Is expressed in several structures, including axis; diencephalon; germ ring; optic vesicle; and prechordal plate. Orthologous to human VASN (vasorin).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

5 figures from 4 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 1 Figure from Panza et al., 2015
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With vasna Human Ortholog

No data available

Associated With vasna Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000483	Cysteine-rich flanking region, C-terminal
Domain	IPR000742	EGF-like domain
Domain	IPR003961	Fibronectin type III
Family	IPR050541	Leucine-rich repeat and transmembrane domain-containing protein
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR032675	Leucine-rich repeat domain superfamily
Homologous_superfamily	IPR036116	Fibronectin type III superfamily
Repeat	IPR001611	Leucine-rich repeat
Repeat	IPR003591	Leucine-rich repeat, typical subtype

Domain Details Per Protein

Protein	Length	Cysteine-rich flanking region, C-terminal	EGF-like domain	Fibronectin type III	Fibronectin type III superfamily	Immunoglobulin-like fold	Leucine-rich repeat	Leucine-rich repeat and transmembrane domain-containing protein	Leucine-rich repeat domain superfamily	Leucine-rich repeat, typical subtype
UniProtKB:A8DZ86 InterPro	688

Transcripts

Genome Browsers

NCBI

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	vasna-201 (1) Ensembl	Ensembl		4,491 nt	Select Tool ZFIN BLAST
mRNA	vasna-202 (1) Ensembl	Ensembl		1,960 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations