Gene

tatdn3

ID

ZDB-GENE-050522-192

Name

TatD DNase domain containing 3

Symbol

tatdn3 Nomenclature History

Previous Names

si:ch211-147d7.4
zgc:110166 (1)

Type

protein_coding_gene

Location

Chr: 20 Mapping Details/Browsers

Description

Predicted to have metal ion binding activity and nuclease activity. Predicted to localize to nucleus. Orthologous to human TATDN3 (TatD DNase domain containing 3).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:110166 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With tatdn3 Human Ortholog

No data available

Associated With tatdn3 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR001130	3'-5' ssDNA/RNA exonuclease TatD-like
Homologous_superfamily	IPR032466	Metal-dependent hydrolase

Domain Details Per Protein

Protein	Length	3'-5' ssDNA/RNA exonuclease TatD-like	Metal-dependent hydrolase
UniProtKB:Q503T5 InterPro	266
UniProtKB:A0A8M3AW96 InterPro	256
UniProtKB:A0A8M2B7L9 InterPro	262

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	tatdn3-202 (1) Ensembl	Ensembl	551 nt	Select Tool
mRNA	tatdn3-201 (1) Ensembl	Ensembl	1,072 nt	Select Tool
mRNA	tatdn3-203 (1) Ensembl	Ensembl	706 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations