Gene

setd1ba

ID
ZDB-GENE-050309-289
Name
SET domain containing 1B, histone lysine methyltransferase a
Symbol
setd1ba Nomenclature History
Previous Names
  • im:7156157
  • si:dkey-237o15.4
Type
protein_coding_gene
Location
Chr: 10 Mapping Details/Browsers
Description
Predicted to have RNA binding activity and histone-lysine N-methyltransferase activity. Involved in hematopoietic progenitor cell differentiation. Predicted to localize to Set1C/COMPASS complex; chromosome; and nuclear speck. Is expressed in brain; cerebellum; and retinal neural layer. Orthologous to human SETD1B (SET domain containing 1B, histone lysine methyltransferase).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
4 figures from 3 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With setd1ba Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Intellectual developmental disorder with seizures and language delay 619000
Associated With setd1ba Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000504 RNA recognition motif domain
Domain IPR001214 SET domain
Domain IPR003616 Post-SET domain
Domain IPR024657 COMPASS complex Set1 subunit, N-SET domain
Domain IPR034468 Set1B, RNA recognition motif
Domain IPR037841 Histone-lysine N-methyltransferase SETD1A/B-like, SET domain
Family IPR044570 Histone-lysine N-methyltransferase Set1-like
Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily IPR035979 RNA-binding domain superfamily
Homologous_superfamily IPR046341 SET domain superfamily
Domain Details Per Protein
Protein Length COMPASS complex Set1 subunit, N-SET domain Histone-lysine N-methyltransferase Set1-like Histone-lysine N-methyltransferase SETD1A/B-like, SET domain Nucleotide-binding alpha-beta plait domain superfamily Post-SET domain RNA-binding domain superfamily RNA recognition motif domain Set1B, RNA recognition motif SET domain SET domain superfamily
UniProtKB:A0A8M2BGG2 1822
UniProtKB:A0A8M2BGL5 1686
UniProtKB:A0A8M3AX93 1823
UniProtKB:A0A8M3BDD3 1798
UniProtKB:Q1LY77 1844
UniProtKB:A0A8M3AX67 1568
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA setd1ba-201 (1) Ensembl 5,953 nt
mRNA setd1ba-202 (1) Ensembl 8,155 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations