Gene

rbpjl

ID

ZDB-GENE-050307-4

Name

recombination signal binding protein for immunoglobulin kappa J region-like

Symbol

rbpjl Nomenclature History

Previous Names

rbpsuhl

Type

protein_coding_gene

Location

Chr: 6 Mapping Details/Browsers

Description

Predicted to have sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to localize to nucleus and transcription factor complex. Orthologous to human RBPJL (recombination signal binding protein for immunoglobulin kappa J region like).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rbpjl Human Ortholog

No data available

Associated With rbpjl Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR015350	Beta-trefoil DNA-binding domain
Domain	IPR015351	RBP-J/Cbf11/Cbf12, DNA binding
Domain	IPR038007	RBP-Jkappa, IPT domain
Family	IPR040159	Suppressor of hairless-like
Homologous_superfamily	IPR008967	p53-like transcription factor, DNA-binding domain superfamily
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR014756	Immunoglobulin E-set
Homologous_superfamily	IPR036358	Beta-trefoil domain superfamily
Homologous_superfamily	IPR037095	RBP-J/Cbf11, DNA binding domain superfamily

Domain Details Per Protein

Protein	Length	Beta-trefoil DNA-binding domain	Beta-trefoil domain superfamily	Immunoglobulin E-set	Immunoglobulin-like fold	p53-like transcription factor, DNA-binding domain superfamily	RBP-J/Cbf11/Cbf12, DNA binding	RBP-J/Cbf11, DNA binding domain superfamily	RBP-Jkappa, IPT domain	Suppressor of hairless-like
UniProtKB:A0A8M9QBJ6 InterPro	483

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	rbpjl-201 (1) Ensembl	Ensembl		1,582 nt	Select Tool ZFIN BLAST
mRNA	rbpjl-202 (1) Ensembl	Ensembl		1,494 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations