Gene
slc6a9
- ID
- ZDB-GENE-050105-3
- Name
- solute carrier family 6 member 9
- Symbol
- slc6a9 Nomenclature History
- Previous Names
-
- glyt1 (2)
- sho
- shocked
- Type
- protein_coding_gene
- Location
- Chr: 2 Mapping Details/Browsers
- Description
- Exhibits glycine transmembrane transporter activity. Involved in several processes, including glycine transport; inhibitory postsynaptic potential; and regulation of glycinergic synaptic transmission. Predicted to localize to plasma membrane. Is expressed in fourth ventricle; hindbrain; neural rod; optic tectum; and spinal cord. Orthologous to human SLC6A9 (solute carrier family 6 member 9).
- Genome Resources
- Note
- None
- Comparative Information
- All Expression Data
- 7 figures from 4 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 12 figures from 5 publications
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
---|---|---|---|
Glycine encephalopathy with normal serum glycine | 617301 |
Human Disease | Fish | Conditions | Citations |
---|---|---|---|
idiopathic scoliosis | slc6a9chk1/chk1 (TU) | standard conditions | Wang et al., 2023 |
idiopathic scoliosis | slc6a9chk1/+ (TU) | standard conditions | Wang et al., 2023 |
Domain, Family, and Site Summary
Domain Details Per Protein
Protein | Length | Sodium:neurotransmitter symporter | Sodium:neurotransmitter symporter, glycine, type 1 | Sodium:neurotransmitter symporter superfamily |
---|---|---|---|---|
UniProtKB:Q4FIV7
|
649 | |||
UniProtKB:Q4FIV5
|
644 | |||
UniProtKB:Q4FIV6
|
653 |
Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
---|---|---|---|---|---|
mRNA |
slc6a9-201
(1)
|
Ensembl | 9,709 nt | ||
mRNA |
slc6a9-202
(1)
|
Ensembl | 1,935 nt | ||
mRNA |
slc6a9-203
(1)
|
Ensembl | 2,372 nt | ||
mRNA |
slc6a9-204
(1)
|
Ensembl | 254 nt | ||
mRNA |
slc6a9-205
(1)
|
Ensembl | 1,962 nt |
Interactions and Pathways
No data available
Plasmids
No data available