Gene

ssrp1b

ID

ZDB-GENE-041008-209

Name

structure specific recognition protein 1b

Symbol

ssrp1b Nomenclature History

Previous Names

im:7140964

Type

protein_coding_gene

Location

Chr: 1 Mapping Details/Browsers

Description

Predicted to have histone binding activity and nucleosome binding activity. Predicted to be involved in DNA repair and DNA replication. Predicted to localize to FACT complex and nuclear chromatin. Orthologous to human SSRP1 (structure specific recognition protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from 3 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7140964 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ssrp1b Human Ortholog

No data available

Associated With ssrp1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR009071	High mobility group box domain
Domain	IPR013719	Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domain
Domain	IPR024954	SSRP1, dimerization domain
Domain	IPR035417	FACT complex subunit SSRP1/POB3, N-terminal PH domain
Domain	IPR048985	FACT complex subunit SSRP1, C-terminal domain
Domain	IPR048993	FACT complex subunit SSRP1-like, first PH domain
Family	IPR000969	FACT complex subunit SSRP1/POB3
Family	IPR050454	RTT106/SSRP1 Histone Chaperone/FACT Complex
Homologous_superfamily	IPR011993	PH-like domain superfamily
Homologous_superfamily	IPR036910	High mobility group box domain superfamily
Homologous_superfamily	IPR038167	SSRP1 domain superfamily

Domain Details Per Protein

Protein	Length	FACT complex subunit SSRP1, C-terminal domain	FACT complex subunit SSRP1-like, first PH domain	FACT complex subunit SSRP1/POB3	FACT complex subunit SSRP1/POB3, N-terminal PH domain	High mobility group box domain	High mobility group box domain superfamily	Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domain	PH-like domain superfamily	RTT106/SSRP1 Histone Chaperone/FACT Complex	SSRP1, dimerization domain	SSRP1 domain superfamily
UniProtKB:F6NLJ7 InterPro	703
UniProtKB:A0A8M9PMB1 InterPro	705

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ssrp1b-201 (1) Ensembl	Ensembl	2,052 nt	Select Tool ZFIN BLAST
mRNA	ssrp1b-202 (1) Ensembl	Ensembl	2,621 nt	Select Tool
mRNA	ssrp1b-203 (1) Ensembl	Ensembl	1,687 nt	Select Tool
mRNA	ssrp1b-204 (1) Ensembl	Ensembl	2,097 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations