Gene

hnrnpdl

ID

ZDB-GENE-040426-2717

Name

heterogeneous nuclear ribonucleoprotein D-like

Symbol

hnrnpdl Nomenclature History

Previous Names

hnrpdl
wu:fa11d08
zgc:66169 (1)

Type

protein_coding_gene

Location

Chr: 10 Mapping Details/Browsers

Description

Predicted to have poly(A) binding activity; poly(G) binding activity; and sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of RNA metabolic process. Predicted to localize to nucleoplasm and ribonucleoprotein complex. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy type 3. Orthologous to human HNRNPDL (heterogeneous nuclear ribonucleoprotein D like).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:66169 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 1 Figure from Vieira et al., 2014
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With hnrnpdl Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
autosomal dominant limb-girdle muscular dystrophy type 3	Alliance	Muscular dystrophy, limb-girdle, autosomal dominant 3	609115

Associated With hnrnpdl Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA recognition motif domain
UniProtKB:Q7SXN2 InterPro	296
UniProtKB:A0A8M9QKN0 InterPro	295

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	hnrnpdl-201 (1) Ensembl	Ensembl	1,449 nt	Select Tool
mRNA	hnrnpdl-205 (1) Ensembl	Ensembl	789 nt	Select Tool
mRNA	hnrnpdl-206 (1) Ensembl	Ensembl	1,343 nt	Select Tool ZFIN BLAST
ncRNA	hnrpdl-003 (1) Ensembl	Ensembl	428 nt	Select Tool
ncRNA	hnrpdl-004 (1) Ensembl	Ensembl	537 nt	Select Tool
ncRNA	hnrpdl-005 (1) Ensembl	Ensembl	889 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations