Gene

nup42

ID

ZDB-GENE-040426-2292

Name

nucleoporin 42

Symbol

nup42 Nomenclature History

Previous Names

nupl2
zgc:77724

Type

protein_coding_gene

Location

Chr: 19 Mapping Details/Browsers

Description

Predicted to have nuclear export signal receptor activity. Predicted to be involved in mRNA transport and protein transport. Predicted to colocalize with nuclear envelope. Orthologous to human NUP42 (nucleoporin 42).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:77724 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With nup42 Human Ortholog

No data available

Associated With nup42 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000571	Zinc finger, CCCH-type
Family	IPR051767	Nucleoporin NUP42 domain-containing protein

Domain Details Per Protein

Protein	Length	Nucleoporin NUP42 domain-containing protein	Zinc finger, CCCH-type
UniProtKB:Q6P0U9 InterPro	414

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	nupl2-201 (1) Ensembl	Ensembl	1,399 nt	Select Tool ZFIN BLAST
ncRNA	nupl2-002 (1) Ensembl	Ensembl	881 nt	Select Tool ZFIN BLAST
ncRNA	nupl2-003 (1) Ensembl	Ensembl	612 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations