Gene

rtcb

ID
ZDB-GENE-040426-2096
Name
RNA 2',3'-cyclic phosphate and 5'-OH ligase
Symbol
rtcb Nomenclature History
Previous Names
  • zgc:76871
Type
protein_coding_gene
Location
Chr: 4 Mapping Details/Browsers
Description
Predicted to have RNA ligase (ATP) activity. Predicted to be involved in tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate. Predicted to localize to cytoplasm; nucleus; and tRNA-splicing ligase complex. Orthologous to human RTCB (RNA 2',3'-cyclic phosphate and 5'-OH ligase).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2005
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With rtcb Human Ortholog
No data available
Associated With rtcb Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Family IPR001233 RNA-splicing ligase, RtcB
Family IPR027513 RNA-splicing ligase RtcB homologue, eukaryotic
Homologous_superfamily IPR036025 tRNA-splicing ligase RtcB-like superfamily
Domain Details Per Protein
Protein Length RNA-splicing ligase, RtcB RNA-splicing ligase RtcB homologue, eukaryotic tRNA-splicing ligase RtcB-like superfamily
UniProtKB:Q6NZS4 505
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
aberrant processed transcript rtcb-201 (1) Ensembl 541 nt
mRNA rtcb-202 (1) Ensembl 1,693 nt
ncRNA ottdart00000061574 (1) Ensembl 657 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations