Gene

vps28

ID
ZDB-GENE-040426-1527
Name
VPS28 subunit of ESCRT-I
Symbol
vps28 Nomenclature History
Previous Names
  • zgc:66078 (1)
Type
protein_coding_gene
Location
Chr: 19 Mapping Details/Browsers
Description
Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to localize to ESCRT I complex. Is expressed in eye; neural tube; and pronephric duct. Orthologous to human VPS28 (VPS28 subunit of ESCRT-I).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
3 figures from 2 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
5 figures from Hu et al., 2019
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With vps28 Human Ortholog
No data available
Associated With vps28 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR017898 Vacuolar protein sorting-associated, VPS28, N-terminal
Domain IPR017899 Vacuolar protein sorting-associated, VPS28, C-terminal
Family IPR007143 Vacuolar protein sorting-associated Vps28
Homologous_superfamily IPR037202 ESCRT assembly domain
Homologous_superfamily IPR037206 VPS28, C-terminal domain superfamily
Homologous_superfamily IPR038358 VPS28, N-terminal domain superfamily
Domain Details Per Protein
Protein Length ESCRT assembly domain Vacuolar protein sorting-associated Vps28 Vacuolar protein sorting-associated, VPS28, C-terminal Vacuolar protein sorting-associated, VPS28, N-terminal VPS28, C-terminal domain superfamily VPS28, N-terminal domain superfamily
UniProtKB:Q6PH25 223
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA vps28-201 (1) Ensembl 1,524 nt
mRNA vps28-202 (1) Ensembl 960 nt
mRNA vps28-203 (1) Ensembl 1,527 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations