Gene

safb

ID
ZDB-GENE-030131-698
Name
scaffold attachment factor B
Symbol
safb Nomenclature History
Previous Names
  • wu:fb40a03
  • wu:fd42g06
  • zgc:55387
Type
protein_coding_gene
Location
Chr: 22 Mapping Details/Browsers
Description
Predicted to have sequence-specific DNA binding activity. Predicted to be involved in regulation of mRNA processing and regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Orthologous to several human genes including SAFB (scaffold attachment factor B).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
2 figures from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With safb Human Ortholog
No data available
Associated With safb Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000504 RNA recognition motif domain
Domain IPR003034 SAP domain
Domain IPR034781 Scaffold attachment factor B1/2, RNA binding domain
Family IPR051738 Scaffold Attachment Factor and Modulators
Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily IPR035979 RNA-binding domain superfamily
Homologous_superfamily IPR036361 SAP domain superfamily
Domain Details Per Protein
Protein Length Nucleotide-binding alpha-beta plait domain superfamily RNA-binding domain superfamily RNA recognition motif domain SAP domain SAP domain superfamily Scaffold Attachment Factor and Modulators Scaffold attachment factor B1/2, RNA binding domain
UniProtKB:Q803X6 855
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA safb-201 (1) Ensembl 3,020 nt
mRNA safb-202 (1) Ensembl 645 nt
ncRNA safb-002 (1) Ensembl 843 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations