Gene

cirbpb

ID

ZDB-GENE-030131-5841

Name

cold inducible RNA binding protein b

Symbol

cirbpb Nomenclature History

Previous Names

cirbp
wu:fb12c11
wu:fi20g12
zgc:136559

Type

protein_coding_gene

Location

Chr: 22 Mapping Details/Browsers

Description

Predicted to enable RNA binding activity. Acts upstream of or within response to cold. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be part of spliceosomal complex. Is expressed in several structures, including gill; heart; liver; muscle; and pleuroperitoneal region. Orthologous to several human genes including CIRBP (cold inducible RNA binding protein).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from 3 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:55300 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With cirbpb Human Ortholog

No data available

Associated With cirbpb Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR003954	RNA recognition motif domain, eukaryote
Domain	IPR034278	RBM3/CIRBP, RNA recognition motif
Family	IPR050441	RNA-binding motif
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Nucleotide-binding alpha-beta plait domain superfamily	RBM3/CIRBP, RNA recognition motif	RNA-binding domain superfamily	RNA-binding motif	RNA recognition motif domain	RNA recognition motif domain, eukaryote
UniProtKB:A0A8M9P4C4 InterPro	203
UniProtKB:A0A8M1P6M4 InterPro	203
UniProtKB:A0A8M1N8U3 InterPro	206

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	cirbpb-201 (1) Ensembl	Ensembl	1,831 nt	Select Tool ZFIN BLAST
mRNA	cirbpb-202 (1) Ensembl	Ensembl	1,574 nt	Select Tool ZFIN BLAST
mRNA	cirbpb-203 (1) Ensembl	Ensembl	643 nt	Select Tool ZFIN BLAST
mRNA	cirbpb-205 (1) Ensembl	Ensembl	1,012 nt	Select Tool ZFIN BLAST
ncRNA	cirbpb-006 (1) Ensembl	Ensembl	2,794 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations