Gene
cirbpb
- ID
- ZDB-GENE-030131-5841
- Name
- cold inducible RNA binding protein b
- Symbol
- cirbpb Nomenclature History
- Previous Names
-
- cirbp
- wu:fb12c11
- wu:fi20g12
- zgc:136559
- Type
- protein_coding_gene
- Location
- Chr: 22 Mapping Details/Browsers
- Description
- Predicted to have RNA binding activity. Involved in response to cold. Predicted to localize to spliceosomal complex. Is expressed in several structures, including gill; heart; liver; muscle; and pleuroperitoneal region. Orthologous to human CIRBP (cold inducible RNA binding protein).
- Genome Resources
- Note
- None
- Comparative Information
- All Expression Data
- 3 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:55300 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Type | InterPro ID | Name |
---|---|---|
Domain | IPR000504 | RNA recognition motif domain |
Domain | IPR003954 | RNA recognition motif domain, eukaryote |
Domain | IPR034278 | RBM3/CIRBP, RNA recognition motif |
Family | IPR050441 | RNA-binding motif |
Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
Domain Details Per Protein
Protein | Length | Nucleotide-binding alpha-beta plait domain superfamily | RBM3/CIRBP, RNA recognition motif | RNA-binding domain superfamily | RNA-binding motif | RNA recognition motif domain | RNA recognition motif domain, eukaryote |
---|---|---|---|---|---|---|---|
UniProtKB:A0A8M9P4C4
|
203 | ||||||
UniProtKB:A0A8M1P6M4
|
203 | ||||||
UniProtKB:A0A8M1N8U3
|
206 |
Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
---|---|---|---|---|---|
mRNA |
cirbpb-201
(1)
|
Ensembl | 1,831 nt | ||
mRNA |
cirbpb-202
(1)
|
Ensembl | 1,574 nt | ||
mRNA |
cirbpb-203
(1)
|
Ensembl | 643 nt | ||
mRNA |
cirbpb-205
(1)
|
Ensembl | 1,012 nt | ||
ncRNA |
cirbpb-006
(1)
|
Ensembl | 2,794 nt |
Interactions and Pathways
No data available
Plasmids
No data available