Gene

phf20l1

ID

ZDB-GENE-030131-5837

Name

PHD finger protein 20 like 1

Symbol

phf20l1 Nomenclature History

Previous Names

fi20g04
si:dkey-97i18.2
wu:fi20g04 (1)

Type

protein_coding_gene

Location

Chr: 16 Mapping Details/Browsers

Description

Predicted to have metal ion binding activity and nucleic acid binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to localize to nucleus. Is expressed in cloaca and proctodeum. Orthologous to human PHF20L1 (PHD finger protein 20 like 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

7 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7162257 (5 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With phf20l1 Human Ortholog

No data available

Associated With phf20l1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR019786	Zinc finger, PHD-type, conserved site
Domain	IPR001965	Zinc finger, PHD-type
Domain	IPR002999	Tudor domain
Domain	IPR013087	Zinc finger C2H2-type
Domain	IPR014002	Agenet domain, plant type
Domain	IPR040477	Lysine-specific demethylase 4-like, Tudor domain
Domain	IPR047405	PHD finger protein 20-like protein 1, Tudor domain
Family	IPR043449	PHD finger protein 20-like
Homologous_superfamily	IPR011011	Zinc finger, FYVE/PHD-type
Homologous_superfamily	IPR013083	Zinc finger, RING/FYVE/PHD-type

Domain Details Per Protein

Protein	Length	Agenet domain, plant type	Lysine-specific demethylase 4-like, Tudor domain	PHD finger protein 20-like	PHD finger protein 20-like protein 1, Tudor domain	Tudor domain	Zinc finger C2H2-type	Zinc finger, FYVE/PHD-type	Zinc finger, PHD-type	Zinc finger, PHD-type, conserved site	Zinc finger, RING/FYVE/PHD-type
UniProtKB:A0A8M9PDN4 InterPro	1116
UniProtKB:A0A8M9PDN8 InterPro	1082
UniProtKB:A0A8M9NZQ6 InterPro	1114
UniProtKB:A0A8M9PK38 InterPro	1115
UniProtKB:A0A8M3B1U6 InterPro	1115
UniProtKB:A0A8M9P8D3 InterPro	1084
UniProtKB:A0A8M9PN32 InterPro	1081

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	phf20l1-201 (1) Ensembl	Ensembl	4,381 nt	Select Tool
mRNA	phf20l1-202 (1) Ensembl	Ensembl	838 nt	Select Tool
mRNA	phf20l1-203 (1) Ensembl	Ensembl	2,967 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations