Gene

sec23b

ID

ZDB-GENE-030131-5479

Name

SEC23 homolog B, coat complex II component

Symbol

sec23b Nomenclature History

Previous Names

fl08h02
wu:fd19h01
wu:fl08h02
zgc:55595
zgc:86871

Type

protein_coding_gene

Location

Chr: 6 Mapping Details/Browsers

Description

Predicted to have GTPase activator activity. Involved in cartilage development; embryonic neurocranium morphogenesis; and erythrocyte development. Predicted to localize to COPII vesicle coat and endoplasmic reticulum exit site. Human ortholog(s) of this gene implicated in Cowden syndrome and congenital dyserythropoietic anemia type II. Orthologous to human SEC23B (SEC23 homolog B, COPII coat complex component).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from 3 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:6903779 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 3 figures from 2 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With sec23b Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
congenital dyserythropoietic anemia type II	Alliance	Dyserythropoietic anemia, congenital, type II	224100
Cowden syndrome 7	Alliance	?Cowden syndrome 7	616858

Associated With sec23b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR006895	Zinc finger, Sec23/Sec24-type
Domain	IPR006896	Sec23/Sec24, trunk domain
Domain	IPR006900	Sec23/Sec24, helical domain
Domain	IPR007123	Gelsolin-like domain
Domain	IPR012990	Sec23/Sec24 beta-sandwich
Domain	IPR037550	Sec23, C-terminal
Family	IPR037364	Protein transport protein Sec23
Homologous_superfamily	IPR029006	ADF-H/Gelsolin-like domain superfamily
Homologous_superfamily	IPR036174	Zinc finger, Sec23/Sec24-type superfamily
Homologous_superfamily	IPR036175	Sec23/Sec24 helical domain superfamily
Homologous_superfamily	IPR036180	Gelsolin-like domain superfamily
Homologous_superfamily	IPR036465	von Willebrand factor A-like domain superfamily

Domain Details Per Protein

Protein	Length	ADF-H/Gelsolin-like domain superfamily	Gelsolin-like domain	Gelsolin-like domain superfamily	Protein transport protein Sec23	Sec23, C-terminal	Sec23/Sec24 beta-sandwich	Sec23/Sec24, helical domain	Sec23/Sec24 helical domain superfamily	Sec23/Sec24, trunk domain	von Willebrand factor A-like domain superfamily	Zinc finger, Sec23/Sec24-type	Zinc finger, Sec23/Sec24-type superfamily
UniProtKB:Q7ZVV7 InterPro	766
UniProtKB:A0A8M6Z6P7 InterPro	772

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	sec23b-201 (1) Ensembl	Ensembl	3,698 nt	Select Tool ZFIN BLAST
mRNA	sec23b-204 (1) Ensembl	Ensembl	3,105 nt	Select Tool ZFIN BLAST
mRNA	sec23b-206 (1) Ensembl	Ensembl	3,133 nt	Select Tool ZFIN BLAST
ncRNA	sec23b-002 (1) Ensembl	Ensembl	365 nt	Select Tool ZFIN BLAST
ncRNA	sec23b-003 (1) Ensembl	Ensembl	464 nt	Select Tool ZFIN BLAST
ncRNA	sec23b-004 (1) Ensembl	Ensembl	777 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations