Gene

pdlim1

ID

ZDB-GENE-030131-5227

Name

PDZ and LIM domain 1 (elfin)

Symbol

pdlim1 Nomenclature History

Previous Names

clim1 (1)
elfin (1)
wu:fa19a03
wu:fy34f10
zgc:110681

Type

protein_coding_gene

Location

Chr: 13 Mapping Details/Browsers

Description

Predicted to have actin binding activity and muscle alpha-actinin binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to localize to Z disc; actin cytoskeleton; and adherens junction. Is expressed in several structures, including anterior axial hypoblast; digestive system; epidermis; nervous system; and yolk syncytial layer. Orthologous to human PDLIM1 (PDZ and LIM domain 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

8 figures from 2 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7158364 (15 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With pdlim1 Human Ortholog

No data available

Associated With pdlim1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001478	PDZ domain
Domain	IPR001781	Zinc finger, LIM-type
Domain	IPR006643	Zasp-like motif
Domain	IPR028537	PDZ and LIM domain protein 1, LIM domain
Domain	IPR031847	PDZ and LIM domain protein 1-4/Zasp-like, middle domain
Family	IPR050604	PDZ and LIM domain-containing
Homologous_superfamily	IPR036034	PDZ superfamily