Gene

syncrip

ID

ZDB-GENE-030131-4862

Name

synaptotagmin binding, cytoplasmic RNA interacting protein

Symbol

syncrip Nomenclature History

Previous Names

nsap1 (1)
wu:fe02c03
wu:fe47h09

Type

protein_coding_gene

Location

Chr: 20 Mapping Details/Browsers

Description

Predicted to have mRNA 5'-UTR binding activity. Predicted to be involved in CRD-mediated mRNA stabilization. Predicted to localize to CRD-mediated mRNA stability complex; nucleus; and ribonucleoprotein complex. Orthologous to human SYNCRIP (synaptotagmin binding cytoplasmic RNA interacting protein).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:65902 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With syncrip Human Ortholog

No data available

Associated With syncrip Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR034544	Heterogeneous nuclear ribonucleoprotein Q, RNA recognition motif 1
Domain	IPR034548	Heterogeneous nuclear ribonucleoprotein Q, RNA recognition motif 2
Domain	IPR041337	Heterogeneous nuclear ribonucleoprotein Q acidic domain
Family	IPR006535	HnRNP R/Q splicing factor
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Heterogeneous nuclear ribonucleoprotein Q acidic domain	Heterogeneous nuclear ribonucleoprotein Q, RNA recognition motif 1	Heterogeneous nuclear ribonucleoprotein Q, RNA recognition motif 2	HnRNP R/Q splicing factor	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA recognition motif domain
UniProtKB:A0A8M3AKL3 InterPro	569
UniProtKB:A0A8M3B3W4 InterPro	568
UniProtKB:Q6NUZ3 InterPro	630
UniProtKB:A0A8M3ALA5 InterPro	532

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	syncrip-201 (1) Ensembl	Ensembl	2,737 nt	Select Tool
mRNA	syncrip-202 (1) Ensembl	Ensembl	1,899 nt	Select Tool ZFIN BLAST
mRNA	syncrip-203 (1) Ensembl	Ensembl	990 nt	Select Tool
mRNA	syncrip-205 (1) Ensembl	Ensembl	916 nt	Select Tool
mRNA	syncrip-206 (1) Ensembl	Ensembl	2,185 nt	Select Tool
mRNA	syncrip-207 (1) Ensembl	Ensembl	824 nt	Select Tool
mRNA	syncrip-208 (1) Ensembl	Ensembl	459 nt	Select Tool
mRNA	syncrip-209 (1) Ensembl	Ensembl	739 nt	Select Tool
ncRNA	syncrip-003 (1) Ensembl	Ensembl	597 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations