Gene
valopa
- ID
- ZDB-GENE-000427-4
- Name
- vertebrate ancient long opsin a
- Symbol
- valopa Nomenclature History
- Previous Names
-
- (VAL)-opsin
- va1 (1)
- valop
- (VA)-opsin
- Type
- protein_coding_gene
- Location
- Chr: 13 Mapping Details/Browsers
- Description
- Predicted to have G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to localize to integral component of plasma membrane and photoreceptor outer segment. Is expressed in several structures, including digestive system; heart; integument; nervous system; and testis.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 12 figures from 5 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 3 figures from Hang et al., 2016
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Binding_site | IPR027430 | Visual pigments (opsins) retinal binding site |
| Domain | IPR017452 | GPCR, rhodopsin-like, 7TM |
| Family | IPR000276 | G protein-coupled receptor, rhodopsin-like |
| Family | IPR001760 | Opsin |
| Family | IPR002206 | Opsin, pineal type |
| Family | IPR050125 | G-protein coupled receptor opsins |
Domain Details Per Protein
| Protein | Length | GPCR, rhodopsin-like, 7TM | G-protein coupled receptor opsins | G protein-coupled receptor, rhodopsin-like | Opsin | Opsin, pineal type | Visual pigments (opsins) retinal binding site |
|---|---|---|---|---|---|---|---|
|
UniProtKB:Q9IB88
|
377 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
valopa-201
(1)
|
Ensembl | 1,845 nt | ||
| mRNA |
valopa-202
(1)
|
Ensembl | 933 nt |
Interactions and Pathways
No data available
Plasmids
No data available