Gene
hoxc9a
- ID
- ZDB-GENE-000328-5
- Name
- homeobox C9a
- Symbol
- hoxc9a Nomenclature History
- Previous Names
-
- BZ-39
- bz39
- hoxc9
- zgc:109844
- Type
- protein_coding_gene
- Location
- Chr: 23 Mapping Details/Browsers
- Description
- Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within negative regulation of vasculogenesis and positive regulation of lymphangiogenesis. Predicted to be active in nucleus. Is expressed in several structures, including CNS interneuron; axial vasculature; neural tube; pectoral fin bud; and spinal cord. Orthologous to human HOXC9 (homeobox C9).
- Genome Resources
- Note
- None
- Comparative Information
- All Expression Data
- 13 figures from 6 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:109844 (10 images)
Wild Type Expression Summary
- All Phenotype Data
- 2 figures from Stoll et al., 2013
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Type | InterPro ID | Name |
---|---|---|
Conserved_site | IPR017970 | Homeobox, conserved site |
Domain | IPR001356 | Homeodomain |
Domain | IPR006711 | Hox9, N-terminal activation domain |
Domain | IPR020479 | Homeodomain, metazoa |
Family | IPR017112 | Homeobox protein HXA9/HXB9/HXC9 |
Family | IPR050803 | Abd-B homeobox transcription factor |
Homologous_superfamily | IPR009057 | Homedomain-like superfamily |
Domain Details Per Protein
Protein | Length | Abd-B homeobox transcription factor | Homedomain-like superfamily | Homeobox, conserved site | Homeobox protein HXA9/HXB9/HXC9 | Homeodomain | Homeodomain, metazoa | Hox9, N-terminal activation domain |
---|---|---|---|---|---|---|---|---|
UniProtKB:Q9YGS6
|
260 | |||||||
UniProtKB:A2BE65
|
270 |
Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
---|---|---|---|---|---|
mRNA |
hoxc9a-201
(1)
|
Ensembl | 1,170 nt |
Interactions and Pathways
No data available
Plasmids