ZFIN ID: ZDB-GENE-980526-27

Mapping Details

Gene Name: orthodenticle homeobox 2a
Symbol: otx2a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN JBrowse 1 50,921,266 - 50,929,957 GRCz11
Ensembl 1 50,921,266 - 50,929,957 GRCz11
Vega 1 50,277,467 - 50,286,158 GRCv10
NCBI Map Viewer 1 50,921,266 - 50,929,957 GRCz11
UCSC 1 - GRCz11
Mapped Clones containing otx2a
DKEYP-123H10 Chr: 1 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
sa12472 1 50,928,849 GRCz11 Busch-Nentwich et al., 2013
1 50,285,050 GRCz10 Busch-Nentwich et al., 2013
1 51,438,171 Zv9 Busch-Nentwich et al., 2013
sa19590 1 50,924,205 GRCz11 Busch-Nentwich et al., 2013
1 50,280,406 GRCz10 Busch-Nentwich et al., 2013
1 51,433,527 Zv9 Busch-Nentwich et al., 2013

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
1 152.6 cM otx3 Mother of Pearl (MOP) Postlethwait, John H. Data
1 453.38 cR otx3 Loeb/NIH/5000/4000 (LN54) Dawid, Igor B. Data
1 6389.0 cR otx3 Goodfellow T51 (T51) Geisler, Robert Data
1 82.5 cM otx3 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION
Primer Sets:
Strain Bandsize Restriction Enzyme Annealing Temperature [C]
SJD 450 36.0
Forward Primer ACCACTGGCGTCCCGTCG
Reverse Primer CCGCCGCAGAGCTGAAGT