ZFIN ID: ZDB-GENE-090312-196

Mapping Details

Gene Name: collagen, type XIX, alpha 1
Symbol: col19a1
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN JBrowse 13 38,990,939 - 39,115,963 GRCz11
ZFIN JBrowse 13 38,814,521 - 38,856,156 GRCz11
Ensembl 13 38,990,939 - 39,115,963 GRCz11
Ensembl 13 38,814,521 - 38,856,156 GRCz11
Vega 13 38,688,631 - 38,730,266 GRCv10
Vega 13 38,865,049 - 38,990,073 GRCv10
NCBI Map Viewer 13 38,814,521 - 38,856,158 GRCz11
UCSC 13 - GRCz11
Mapped Clones containing col19a1
CH73-52H17 Chr: 13 Details
DKEY-180F8 Chr: 13 Details
DKEY-49L3 Chr: 13 Details
CH211-37A16 Chr: 13 Details
CH211-153A20 Chr: 13 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
sa22363 13 39,073,710 GRCz11 Busch-Nentwich et al., 2013
13 38,947,820 GRCz10 Busch-Nentwich et al., 2013
13 39,633,719 Zv9 Busch-Nentwich et al., 2013
sa42271 13 39,038,860 GRCz11 Busch-Nentwich et al., 2013
13 38,912,970 GRCz10 Busch-Nentwich et al., 2013
13 39,598,869 Zv9 Busch-Nentwich et al., 2013
sa42272 13 39,038,906 GRCz11 Busch-Nentwich et al., 2013
13 38,913,016 GRCz10 Busch-Nentwich et al., 2013
13 39,598,915 Zv9 Busch-Nentwich et al., 2013
sa42273 13 39,059,376 GRCz11 Busch-Nentwich et al., 2013
13 38,933,486 GRCz10 Busch-Nentwich et al., 2013
13 39,619,385 Zv9 Busch-Nentwich et al., 2013

GENETIC MAPPING PANELS: No data available
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z44520b SSLP 13 Hilario et al., 2010
z25253 SSLP 13 Hilario et al., 2010
b393 Feature 13 0.0 KB Hilario et al., 2010

OTHER MAPPING INFORMATION
Genomic Feature b393 is an allele of col19a1
Marker Type Chr Distance Publication / Person Comments
z44520b SSLP 13 19.3 cM Hilario et al., 2010
z25253 SSLP 13 2.1 cM Hilario et al., 2010
col19a1 GENE 13 0.0 KB Hilario et al., 2010
z9995 SSLP 13 Beattie et al., 2000 Beattie, et al. (2000. Dev 127:2653-2662.), outcrossed stumpy (on *AB background) to WIK and SJD strains to create polymorphic mapping lines. z9995 and z3424 segregated with stumpyb393 in all of the 50 mutants tested, placing this mutation on LG13.
z3424 SSLP 13 Beattie et al., 2000 Beattie, et al. (2000. Dev 127:2653-2662.), outcrossed stumpy (on *AB background) to WIK and SJD strains to create polymorphic mapping lines. z9995 and z3424 segregated with stumpyb393 in all of the 50 mutants tested, placing this mutation on LG13.
Genomic Feature b393 is an allele of col19a1
Chr 13 Beattie et al., 2000 Beattie, et al. (2000. Dev 127:2653-2662.), outcrossed stumpy (on *AB background) to WIK and  ...
Genomic Feature b398 is an allele of col19a1