ZFIN ID: ZDB-GENE-980526-72

Mapping Details

Gene Name: retinoic acid receptor, alpha b
Symbol: rarab
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN JBrowse 3 33,066,004 - 33,113,879 GRCz11
Ensembl 3 33,066,004 - 33,113,879 GRCz11
Vega 3 32,934,290 - 33,127,907 GRCv10
NCBI Map Viewer 3 33,064,437 - 33,277,633 GRCz11
UCSC 3 - GRCz11
Mapped Clones containing rarab
CH211-196P24 Chr: 3 Details
DKEY-242N9 Chr: 3 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
sa20057 3 33,069,208 GRCz11 Busch-Nentwich et al., 2013
3 32,937,494 GRCz10 Busch-Nentwich et al., 2013
3 33,206,184 Zv9 Busch-Nentwich et al., 2013
sa20058 3 33,069,879 GRCz11 Busch-Nentwich et al., 2013
3 32,938,165 GRCz10 Busch-Nentwich et al., 2013
3 33,206,855 Zv9 Busch-Nentwich et al., 2013
la015178Tg 3 33,225,179 - 33,225,189 Zv9
la015179Tg 3 33,245,756 - 33,245,766 Zv9
la024132Tg 3 33,227,345 - 33,227,355 Zv9
la024134Tg 3 33,275,879 - 33,275,889 Zv9
la028902Tg 3 33,257,278 - 33,257,288 Zv9

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
3 75.2 cM rara2b Mother of Pearl (MOP) Postlethwait, John H. Data
3 51.6 cM rara2b Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION
Markers Encoded by rarab
fj66e06 Chr: 3 Details
Primer Sets:
Strain Bandsize Restriction Enzyme Annealing Temperature [C]
SJD 1068 DdeI 56.0
Forward Primer GAGGGTCTGGAGGGAGGC
Reverse Primer GGGGGTCTCTGTGTCTTTCG
Genomic Feature sa20057 is an allele of rarab