Genomic Feature

ioz14

ID
ZDB-ALT-180118-2
Name
ioz14
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Liu Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Small Deletion
Variant Location
Chr 5: 3169817 - 3170802 (GRCz11) (1) Details
Nucleotide change
TGTGGGCTTGATCTACCAGTATGGATGGCACCGAGAGATAATATTAGGAGCGGTAATGTATAATTATGCTTATAGCTGGATGTTAGGACAGTTTTTGTGTGTGAATTTGAAGTATTTTAAGATCATTTATCTTTAATGCGTCACAAAATGCATAACGTTGTGTTCATTTTAAGCTTAACTTGTAAAACTTTGGTGTTTGTATGCATTTATATTGGATTATCTACTGATGCATGAACAAAATTAGGCTTTTTGTGGAGCGTGAATAAGTGTAAAGAGTATTTCAGCACATTGAATAACTGATAACGCGCAGTTTAAAGTCAGTTCCTGTTCAACAATCATTTCAAAATTGGGATACATATGCATTTTTAGGATTTCATCGCCGTCTCTTCTGAAATTCTGCAAAGATAATTACATTTCTTAACAAGTATCTTAATAAACACTGAAAAAATTTACGATCAGGAACTAAAACTTGGCTCTTTTTGACAGTAAAAAGCTTACTCATGCCGATCAAAATGGCTGCCGTCTGATATACAGGAAGACGTTTGCGCTGTGCATGAAATGGCGCATTGCATATATTAAGGCTTTTGATTTTATTCAGTGCTGATTTACTTTTAGTTGATGCCTATTGCATAAACTTTGATGTAATTTAAACAAATCATGTGTGGCAATGCATTTGCTGTAAGCGTCTACATAACGCACACCACCGATTATTAATCATAAAGATGATTCACCCATCCATGCATGTCTTATGTTAAAAAATATAAATTCATTTTTTTTTTATAAAAAGCTGTGAGTTTGAAGTGTTTGTGTAGTTTGGGTGGGGTCCAGAAGTGTGTGTGTGTGTGTGTGTGTTTATGTGAAGGAGGAGTCCGAGATGTCTGCTTTTATCAGGAAGTCCAGAAACATCAGGACAAAAGGACGTACAGTGCAGTCATCCATAAAGTAGAAAGCACTACTAAACCCCTCGCCACAGTGTAGTGTTTCCT/-
Variant Notes
Mutation impairs secondary RNA structure of miR-142a and induces failure to  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
986 bp deleted (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
AATATAGTTCTTTTGGATTTACTACATTTTTTTAAAGGTAAGTTGTTGCAAACAATTCATATGGGCTGAATTTACACAAGCACATGACTACATTTAATGTGTGTGTTTATATTCAGCCCATATTAAATAGTTTGCAACCGCTTAACATTAAAGGAAATGTAGTATATCATTATTTTCAGTGCAAAGCCTCAACGGTGCATTCATCTTTAAATAAAAAAATAAAAACGGGTCTCAGCAGAGGAAATGTGTGCGCGTGAATATCTGCGGACACTAGCAATGTGCTTAAATGAGCGGGGGGCAAAATGCGGCAGCCAATCAGAGTGCAGCTTGCGATTCTGACTGTTATTGCCTCTTCCTGTGTGGTCGAGCGCACGTGGTTGGCAGCGAGATTAAATAGCAGCACTTCTTCTCTTTTAGGCCCACTTCTGAAGAGGAAGACAACTAACACACACTGCTAAAACCACTGGAGGAGGAGGAGAAGATGATGAAGATGAGCCAAC
TGTGGGCTTGATCTACCAGTATGGATGGCACCGAGAGATAATATTAGGAGCGGTAATGTATAATTATGCTTATAGCTGGATGTTAGGACAGTTTTTGTGTGTGAATTTGAAGTATTTTAAGATCATTTATCTTTAATGCGTCACAAAATGCATAACGTTGTGTTCATTTTAAGCTTAACTTGTAAAACTTTGGTGTTTGTATGCATTTATATTGGATTATCTACTGATGCATGAACAAAATTAGGCTTTTTGTGGAGCGTGAATAAGTGTAAAGAGTATTTCAGCACATTGAATAACTGATAACGCGCAGTTTAAAGTCAGTTCCTGTTCAACAATCATTTCAAAATTGGGATACATATGCATTTTTAGGATTTCATCGCCGTCTCTTCTGAAATTCTGCAAAGATAATTACATTTCTTAACAAGTATCTTAATAAACACTGAAAAAATTTACGATCAGGAACTAAAACTTGGCTCTTTTTGACAGTAAAAAGCTTACTCATGCCGATCAAAATGGCTGCCGTCTGATATACAGGAAGACGTTTGCGCTGTGCATGAAATGGCGCATTGCATATATTAAGGCTTTTGATTTTATTCAGTGCTGATTTACTTTTAGTTGATGCCTATTGCATAAACTTTGATGTAATTTAAACAAATCATGTGTGGCAATGCATTTGCTGTAAGCGTCTACATAACGCACACCACCGATTATTAATCATAAAGATGATTCACCCATCCATGCATGTCTTATGTTAAAAAATATAAATTCATTTTTTTTTTATAAAAAGCTGTGAGTTTGAAGTGTTTGTGTAGTTTGGGTGGGGTCCAGAAGTGTGTGTGTGTGTGTGTGTGTTTATGTGAAGGAGGAGTCCGAGATGTCTGCTTTTATCAGGAAGTCCAGAAACATCAGGACAAAAGGACGTACAGTGCAGTCATCCATAAAGTAGAAAGCACTACTAAACCCCTCGCCACAGTGTAGTGTTTCCT/- ACTTTATGGATGAGTGTACTGTTGGCTGCTGGGAACACTTCGTGACGACTGAAACCAAAGGAAAAGAGGAACTGGCTTTG  ...
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations
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